We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SRI
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:58.8RPKM
FANTOM5:219.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA019004

 

Antibody HPA073666

 

Glial cells

Medium   High  

Neuronal cells

Low   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

58.8

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 58.8
Samples: 117

Max RPKM: 115.1
Min RPKM: 27.7
Std RPKM: 15.0
Median RPKM: 57.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 115.1
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 108.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 96.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 95.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 90.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 84.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 81.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 80.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 80.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 78.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 77.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 76.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 75.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 74.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 74.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 73.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 73.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 73.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 71.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 70.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 70.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 69.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 69.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 69.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 69.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 68.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 66.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 66.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 66.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 66.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 66.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 66.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 65.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 65.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 65.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 65.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 64.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 63.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 63.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 63.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 62.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 61.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 61.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 61.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 61.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 61.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 61.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 60.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 60.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 59.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 58.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 58.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 58.4
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 58.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 56.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 56.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 55.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 55.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 55.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 55.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 55.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 55.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 54.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 53.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 52.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 51.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 51.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 51.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 50.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 50.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 50.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 50.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 50.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 49.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 49.6
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 49.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 48.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 48.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 48.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 48.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 48.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 47.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 47.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 47.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 47.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 47.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 47.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 46.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 46.3
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 46.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 46.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 45.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 45.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 44.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 44.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 44.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 44.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 42.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 42.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 41.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 40.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 38.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 38.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 37.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 33.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 32.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 31.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 27.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

219.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 238.6
FF:10164-103B2 76 years, female 238.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.