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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:572.6TPM
GTEx:48.5RPKM
FANTOM5:144.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
 

Antibody staining

Antibody HPA019004

  

Antibody HPA073666

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 High   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

572.6
overview Male, age 54 Sample 1
TPM: 453.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 418.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 639.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 788.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 269.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 499.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 990.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 579.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 368.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 715.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 462.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 695.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 561.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

48.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.9
Samples: 149

Max RPKM: 25.6
Min RPKM: 11.4
Std RPKM: 2.7
Median RPKM: 16.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 25.6
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 24.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 24.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 24.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 23.5
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 23.2
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 22.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 22.0
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 21.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 21.3
Show all
Colon - Transverse
RPKM: 72.4
Samples: 196

Max RPKM: 289.3
Min RPKM: 11.6
Std RPKM: 49.2
Median RPKM: 71.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 289.3
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 228.7
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 183.1
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 179.4
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 174.5
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 174.1
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 173.0
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 171.9
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 165.3
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 159.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

144.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 144.1
FF:10014-101C5 62,83,84 years, mixed 144.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.