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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.1TPM
GTEx:10.1RPKM
FANTOM5:48.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody HPA044322

  

Endothelial cells

 Medium  

Glandular cells

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

15.1
overview Male, age 54 Sample 1
TPM: 11.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 17.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 14.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 18.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.8
Samples: 149

Max RPKM: 13.6
Min RPKM: 5.9
Std RPKM: 1.3
Median RPKM: 9.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 13.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 13.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 12.9
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 12.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 12.6
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 12.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 12.3
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 12.2
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 12.1
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 12.1
Show all
Colon - Transverse
RPKM: 10.3
Samples: 196

Max RPKM: 15.1
Min RPKM: 4.7
Std RPKM: 1.3
Median RPKM: 10.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 15.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 13.6
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 13.6
GTEX-11NSD-1626-SM-5986U 20-29 years, male 13.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 13.3
GTEX-144GM-1226-SM-5LU52 20-29 years, male 13.3
GTEX-139YR-2126-SM-5KM11 50-59 years, male 13.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 13.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 12.8
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 12.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

48.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 48.5
FF:10014-101C5 62,83,84 years, mixed 48.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.