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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  Upstate
 

Product name

HPA008273   HPA012828   05-346  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Not known  

Other gene match

     

Released in version

4   4   1  

References

1   2    

Proper citation

Atlas Antibodies Cat#HPA008273, RRID:AB_1853945   Atlas Antibodies Cat#HPA012828, RRID:AB_1853946    

VALIDATION SUMMARY

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 
Immunocytochemistry


Validated
 

Validated
   
Immunohistochemistry


Validated

Validated
 

Validated

Validated
  Supported  
Western blot

Uncertain   Supported   Supported  
Protein array

Supported   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Formal validation: Independent

Validated

Antibody staining overlaps with antibody HPA012828.
 
Validated

Antibody staining overlaps with antibody HPA008273.
   
 

Standard validation

Supported   Supported    

     

Figure description

Immunofluorescent staining of human cell line U-251 MG shows localization to cytosol.   Immunofluorescent staining of human cell line A-431 shows localization to nucleoli & cytosol.    

Antibody dilution

1:30   1:16    

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
   

 
   

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 43 cell lines.    
 

Formal validation: Independent

Validated

Pearson correlation >0.6 for protein expression in cell lines using independent antibodies.
 
Validated

Pearson correlation >0.6 for protein expression in cell lines using independent antibodies.
   

 
   

Figure description

Distribution of protein expression (antibody staining).
Pearson correlation with HPA012828 across 45 cell lines.
  Distribution of protein expression (antibody staining).
Pearson correlation with HPA008273 across 45 cell lines.
   
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human cerebral cortex shows strong cytoplasmic and nuclear positivity in neuronal cells.   Immunohistochemical staining of human cerebral cortex shows strong cytoplasmic and nuclear positivity in neuronal cells and glial cells.   Immunohistochemical staining of human cerebral cortex shows strong cytoplasmic and nuclear positivity in neuronal cells.  

Expression

RNA: detected in 35 tissues
Protein: detected in 30 cell types
  RNA: detected in 35 tissues
Protein: detected in 19 cell types
  RNA: detected in 35 tissues
Protein: detected in 11 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:25   1:80   1:150  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.   Consistent with RNA expression data.  
 

Standard validation

  Supported    

     

Figure description

  Immunoreactivity observed in neuronal cell bodies and dendrites in various areas of the brain.    

WESTERN BLOT

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Weak band of predicted size but with additional bands of higher intensity also present.
  Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

  Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

199.5, 199.1, 59, 49.6   199.5, 199.1, 61.8, 59, 49.6   199.5, 199.1, 61.8, 59, 49.6, 21.8, 11.2  

Antibody dilution

1:250   1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:500   1:500    

ANTIGEN INFORMATION

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Not known  

Length (aa)

135   141    

Antigen sequence

SLPRPSSILPPRRGVSGDRDENSFSLNSSISSSARRTTRSEPIRRAGKSG
TSTPTTPGSTAITPGTPPSYSSRTPGTPGTPSYPRTPHTPGTPKSAILVP
SEKKVAIIRTPPKSPATPKQLRLINQPLPDLKNVK
 
EAKAPHWTSAPLTEASAHSHPPEIKDQGGAGEGLVRSANGFPYREDEEGA
FGEHGSQGTYSNTKENGINGELTSADRETAEEVSARIVQVVTAEAVAVLK
GEQEKEAQHKDQTAALPLAAEETANLPPSPPPSPASEQTVT
   

Matching transcripts

MAP2-001 - ENSP00000353508 [100%]
MAP2-002 - ENSP00000376032 [100%]
MAP2-003 - ENSP00000199940 [100%]
MAP2-014 - ENSP00000392164 [100%]
MAP2-015 - ENSP00000355290 [100%]
  MAP2-001 - ENSP00000353508 [100%]
MAP2-002 - ENSP00000376032 [100%]
MAP2-003 - ENSP00000199940 [100%]
MAP2-014 - ENSP00000392164 [100%]
MAP2-015 - ENSP00000355290 [100%]
MAP2-016 - ENSP00000409969 [100%]
   

Other gene match

     
ANTIGEN VIEW
MAP2-001
MAP2-002
MAP2-003
MAP2-014
MAP2-015
MAP2-016

RELEVANT PUBLICATIONS

 
 

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

1.

Tanycytes of the hypothalamic median eminence form a diet-responsive neurogenic niche
Lee DA et al
Nat Neurosci 2012;15(5):700-2
  The Human Protein Atlas--a tool for pathology
Pontén F et al
J Pathol 2008;216(4):387-93
   

2.

  Antibodies biotinylated using a synthetic Z-domain from protein A provide stringent in situ protein detection
Andersson S et al
J Histochem Cytochem 2013;61(11):773-84
   
 

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