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SDF4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:89.8TPM
GTEx:63.9RPKM
FANTOM5:148.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA011249

  

Antibody CAB015227

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   

COLON - HPA RNA-seq

Average TPM

89.8
overview Male, age 54 Sample 1
TPM: 138.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 115.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 121.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 119
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 96.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 62.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 52.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 65.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 59.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 88.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 91.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 86.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 69
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

63.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 52.3
Samples: 149

Max RPKM: 76.0
Min RPKM: 37.5
Std RPKM: 6.9
Median RPKM: 51.5
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 76.0
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 70.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 69.2
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 68.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 65.8
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 65.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 64.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 64.3
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 63.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 63.5
Show all
Colon - Transverse
RPKM: 72.7
Samples: 196

Max RPKM: 127.8
Min RPKM: 22.4
Std RPKM: 17.5
Median RPKM: 72.5
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 127.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 118.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 117.3
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 107.0
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 106.1
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 103.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 103.1
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 101.1
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 99.3
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 98.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

148.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 148.2
FF:10014-101C5 62,83,84 years, mixed 148.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.