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CDH17
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  R&D Systems
 

Product name

HPA023614   HPA023616   HPA026556   MAB1032  

Host species

Rabbit   Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

       

Released in version

5   5   5   5  

References

  1      

Proper citation

Atlas Antibodies Cat#HPA023614, RRID:AB_1845896   Atlas Antibodies Cat#HPA023616, RRID:AB_1845895   Atlas Antibodies Cat#HPA026556, RRID:AB_1845897    

VALIDATION SUMMARY

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 
Immunocytochemistry

 

Validated
 

Validated
   
Immunohistochemistry

Supported  

Validated
 

Validated

Validated
  Supported  
Western blot

Supported   Supported   Supported   Supported  
Protein array

Approved   Supported   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Formal validation: Independent

 
Validated

Antibody staining overlaps with antibody HPA026556.
 
Validated

Antibody staining overlaps with antibody HPA023616.
   
 

Standard validation

  Supported   Supported    

       

Figure description

  Immunofluorescent staining of human cell line CACO-2 shows localization to cell junctions.   Immunofluorescent staining of human cell line CACO-2 shows localization to cell junctions.    

Antibody dilution

  1:98   1:111    

Literature conformity

  The subcellular location is supported by literature.   The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Formal validation: Orthogonal

   
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
   

   
   

Figure description

    Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.    
 

Formal validation: Independent

 
Validated

Spearman correlation >0.6 for protein expression in tissues using independent antibodies.
 
Validated

Spearman correlation >0.6 for protein expression in tissues using independent antibodies.
   

 
 
   

Figure description

  Distribution of protein expression (antibody staining).
Spearman correlation with HPA026556 across 74 cell types.
  Distribution of protein expression (antibody staining).
Spearman correlation with HPA023616 across 74 cell types.
   
 

Standard validation

Supported   Supported   Supported   Supported  

       

Figure description

Immunohistochemical staining of human small intestine shows membranous and cytoplasmic positivity in glandular cells.   Immunohistochemical staining of human duodenum shows strong membranous positivity in glandular cells.   Immunohistochemical staining of human colon shows strong cytoplasmic and membranous positivity in glandular cells.   Immunohistochemical staining of human small intestine shows strong membranous positivity in glandular cells.  

Expression

RNA: detected in 31 tissues
Protein: detected in 35 cell types
  RNA: detected in 31 tissues
Protein: detected in 12 cell types
  RNA: detected in 31 tissues
Protein: detected in 15 cell types
  RNA: detected in 31 tissues
Protein: detected in 20 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:1200   1:1500   1:1000   1:6000  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Standard validation

Supported

Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

       

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY418246)
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY418246)
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY418246)
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

92.2   92.2   92.2, 64.2   92.2, 64.2, 16.6  

Antibody dilution

1:125   1:250   1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

       

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:3000   1:3000   1:3000    

ANTIGEN INFORMATION

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Recombinant protein fragment   Recombinant protein  

Length (aa)

81   77   91    

Antigen sequence

INNVMYFQINNKTGAISLTREGSQELNPAKNPSYNLVISVKDMGGQSENS
FSDTTSVDIIVTENIWKAPKPVEMVENSTDP
 
HPIKITQVRWNDPGAQYSLVDKEKLPRFPFSIDQEGDIYVTQPLDREEKD
AYVFYAVAKDEYGKPLSYPLEIHVKVK
 
GTKVGNVTAKDPEGLDISYSLRGDTRGWLKIDHVTGEIFSVAPLDREAGS
PYRVQVVATEVGGSSLSSVSEFHLILMDVNDNPPRLAKDYT
   

Matching transcripts

CDH17-001 - ENSP00000027335 [100%]
CDH17-003 - ENSP00000401468 [100%]
  CDH17-001 - ENSP00000027335 [100%]
CDH17-003 - ENSP00000401468 [100%]
  CDH17-001 - ENSP00000027335 [100%]
CDH17-002 - ENSP00000392811 [100%]
CDH17-003 - ENSP00000401468 [100%]
   

Other gene match

       
ANTIGEN VIEW
CDH17-001
CDH17-002
CDH17-003

RELEVANT PUBLICATIONS

 
 

Antibody HPA023614

 

Antibody HPA023616

 

Antibody HPA026556

 

Antibody CAB025143

 

1.

  SATB2 in combination with cytokeratin 20 identifies over 95% of all colorectal carcinomas
Magnusson K et al
Am J Surg Pathol 2011;35(7):937-48
     
 

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