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COLON - Expression summary

RNA expression
HPA:21.0TPM
GTEx:14.9RPKM
FANTOM5:74.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

21.0
overview Male, age 54 Sample 1
TPM: 24.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 35.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 31.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.1
Samples: 149

Max RPKM: 36.3
Min RPKM: 5.5
Std RPKM: 6.1
Median RPKM: 15.2
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 36.3
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 33.5
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 32.4
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 32.1
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 31.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 30.3
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 29.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 28.0
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 27.5
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 25.7
Show all
Colon - Transverse
RPKM: 13.9
Samples: 196

Max RPKM: 37.5
Min RPKM: 5.2
Std RPKM: 5.8
Median RPKM: 12.5
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 37.5
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 34.6
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 32.9
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 29.7
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 29.7
GTEX-S341-1426-SM-4AD6U 40-49 years, female 29.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 27.4
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 27.3
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 26.4
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 24.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.3
FF:10014-101C5 62,83,84 years, mixed 74.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.