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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.8TPM
GTEx:5.3RPKM
FANTOM5:17.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA050095

  

Antibody CAB011713

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

16.8
overview Male, age 54 Sample 1
TPM: 18.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 20.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 21.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.7
Samples: 149

Max RPKM: 9.3
Min RPKM: 3.3
Std RPKM: 0.9
Median RPKM: 5.6
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 9.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 8.7
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 8.2
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 8.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 8.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 8.0
GTEX-13111-1926-SM-5GCOL 50-59 years, male 7.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 7.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 7.7
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 7.1
Show all
Colon - Transverse
RPKM: 5.1
Samples: 196

Max RPKM: 9.0
Min RPKM: 2.4
Std RPKM: 1.3
Median RPKM: 4.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 9.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 8.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 8.2
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 7.9
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 7.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 7.9
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 7.7
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 7.5
GTEX-11NSD-1626-SM-5986U 20-29 years, male 7.4
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 7.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

17.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 17.1
FF:10014-101C5 62,83,84 years, mixed 17.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.