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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.6TPM
GTEx:5.8RPKM
FANTOM5:55.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA001906

  

Antibody CAB009372

  

Antibody CAB068176

  

Endothelial cells

 Medium   High   High  

Glandular cells

 Medium   High   Medium  

Peripheral nerve/ganglion

 Medium   High   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

11.6
overview Male, age 54 Sample 1
TPM: 15.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 13.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.7
Samples: 149

Max RPKM: 12.6
Min RPKM: 3.6
Std RPKM: 1.3
Median RPKM: 6.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 12.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 10.6
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 10.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 10.0
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 9.9
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 9.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 9.4
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 9.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 8.9
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 8.7
Show all
Colon - Transverse
RPKM: 5.0
Samples: 196

Max RPKM: 10.8
Min RPKM: 1.7
Std RPKM: 1.8
Median RPKM: 4.7
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 10.8
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 9.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 9.8
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 9.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 9.7
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 9.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 9.0
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 8.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 8.6
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 8.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

55.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 55.8
FF:10014-101C5 62,83,84 years, mixed 55.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.