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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:71.0TPM
GTEx:69.0RPKM
FANTOM5:109.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA035873

  

Antibody HPA035874

  

Antibody CAB009794

  

Endothelial cells

 Medium   Medium   Medium  

Glandular cells

 Medium   Low   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

71.0
overview Male, age 54 Sample 1
TPM: 62.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 65.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 55.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 77.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 53.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 85.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 76.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 60
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 88.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 63.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 83.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 90.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 61.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

69.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 79.5
Samples: 149

Max RPKM: 106.5
Min RPKM: 47.3
Std RPKM: 10.9
Median RPKM: 79.3
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 106.5
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 105.7
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 105.4
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 102.3
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 100.8
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 98.8
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 98.5
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 97.7
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 97.0
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 96.6
Show all
Colon - Transverse
RPKM: 60.9
Samples: 196

Max RPKM: 99.7
Min RPKM: 31.1
Std RPKM: 15.4
Median RPKM: 56.8
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 99.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 96.4
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 95.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 94.7
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 92.8
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 92.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 92.4
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 91.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 90.9
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 90.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

109.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 109.1
FF:10014-101C5 62,83,84 years, mixed 109.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.