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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:67.1TPM
GTEx:36.5RPKM
FANTOM5:94.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA025770

  

Antibody HPA025948

  

Antibody HPA027341

  

Antibody CAB017785

  

Endothelial cells

 Not detected   Not detected   High   Low  

Glandular cells

 High   Medium   High   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium   Medium  
       
       
       

COLON - HPA RNA-seq

Average TPM

67.1
overview Male, age 54 Sample 1
TPM: 50.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 50.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 66.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 71
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 31
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 78.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 87.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 77.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 57
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 101.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 84.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 70.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 44.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.1
Samples: 149

Max RPKM: 46.2
Min RPKM: 10.6
Std RPKM: 6.9
Median RPKM: 31.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 46.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 45.8
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 44.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 43.4
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 42.0
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 41.7
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 41.5
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 41.3
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 41.3
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 41.2
Show all
Colon - Transverse
RPKM: 41.4
Samples: 196

Max RPKM: 78.6
Min RPKM: 8.5
Std RPKM: 12.8
Median RPKM: 41.5
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 78.6
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 74.6
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 72.6
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 68.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 66.9
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 66.6
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 64.8
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 63.4
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 62.7
GTEX-QMRM-1226-SM-447C6 50-59 years, male 62.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

94.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 94.7
FF:10014-101C5 62,83,84 years, mixed 94.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.