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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.7TPM
GTEx:19.9RPKM
FANTOM5:41.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
 

Antibody staining

Antibody HPA017880

  

Antibody HPA027551

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

16.7
overview Male, age 54 Sample 1
TPM: 13.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 17.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 17.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

19.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.0
Samples: 149

Max RPKM: 31.1
Min RPKM: 5.5
Std RPKM: 5.0
Median RPKM: 20.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 31.1
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 30.8
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 30.1
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 29.7
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 28.1
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 28.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 28.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 27.7
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 27.7
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 27.6
Show all
Colon - Transverse
RPKM: 19.9
Samples: 196

Max RPKM: 30.1
Min RPKM: 11.8
Std RPKM: 3.4
Median RPKM: 19.8
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 30.1
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 29.9
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 29.4
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 28.2
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 27.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 27.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 26.7
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 26.6
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 26.5
GTEX-117YX-0826-SM-5H11J 50-59 years, male 26.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

41.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 41.3
FF:10014-101C5 62,83,84 years, mixed 41.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.