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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:132.1TPM
GTEx:56.6RPKM
FANTOM5:226.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA021616

  

Antibody CAB004035

  

Antibody CAB047324

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 Not detected   Medium   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

132.1
overview Male, age 54 Sample 1
TPM: 98.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 125.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 175.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 226.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 75.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 107.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 113.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 119.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 93.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 151.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 154.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 108.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 169.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

56.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 23.6
Samples: 149

Max RPKM: 59.7
Min RPKM: 8.6
Std RPKM: 8.2
Median RPKM: 22.1
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 59.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 52.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 52.0
GTEX-XBED-1726-SM-47JYO 60-69 years, male 48.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 43.9
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 41.8
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 40.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 40.6
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 39.3
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 38.1
Show all
Colon - Transverse
RPKM: 81.7
Samples: 196

Max RPKM: 516.4
Min RPKM: 11.3
Std RPKM: 58.1
Median RPKM: 76.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 516.4
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 297.5
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 274.0
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 200.8
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 199.2
GTEX-144GM-1226-SM-5LU52 20-29 years, male 195.6
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 187.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 163.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 162.1
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 159.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

226.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 226.0
FF:10014-101C5 62,83,84 years, mixed 226.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.