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COLON - Expression summary

RNA expression
HPA:5.5TPM
GTEx:3.6RPKM
FANTOM5:32.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

5.5
overview Male, age 54 Sample 1
TPM: 4.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.2
Samples: 149

Max RPKM: 6.4
Min RPKM: 2.3
Std RPKM: 0.7
Median RPKM: 4.2
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 6.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 6.2
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 5.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 5.6
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 5.5
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 5.5
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 5.5
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 5.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 5.4
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 5.4
Show all
Colon - Transverse
RPKM: 3.1
Samples: 196

Max RPKM: 5.7
Min RPKM: 0.7
Std RPKM: 0.9
Median RPKM: 3.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 5.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 5.7
GTEX-1128S-1626-SM-5H12O 60-69 years, female 5.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 5.6
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 5.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 5.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 4.9
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 4.8
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 4.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 4.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

32.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 32.5
FF:10014-101C5 62,83,84 years, mixed 32.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.