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PALM

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.7TPM
GTEx:19.0RPKM
FANTOM5:18.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Glandular cells:Medium
Endothelial cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA041713

  

Antibody HPA049578

  

Glandular cells

 Medium   Medium  

Endothelial cells

 Medium  

Peripheral nerve/ganglion

 Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

4.7
overview Male, age 54 Sample 1
TPM: 4.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

19.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 27.6
Samples: 149

Max RPKM: 47.8
Min RPKM: 11.7
Std RPKM: 9.0
Median RPKM: 27.5
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 47.8
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 47.1
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 46.1
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 45.9
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 45.6
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 45.1
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 44.7
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 44.6
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 44.5
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 44.2
Show all
Colon - Transverse
RPKM: 12.5
Samples: 196

Max RPKM: 54.5
Min RPKM: 1.6
Std RPKM: 10.0
Median RPKM: 9.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 54.5
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 44.3
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 41.5
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 40.6
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 39.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 36.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 36.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 34.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 32.0
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 31.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.6
FF:10014-101C5 62,83,84 years, mixed 18.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.