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CABIN1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.3TPM
GTEx:13.0RPKM
FANTOM5:31.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA043296

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

11.3
overview Male, age 54 Sample 1
TPM: 13.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.8
Samples: 149

Max RPKM: 23.5
Min RPKM: 7.2
Std RPKM: 3.3
Median RPKM: 13.6
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 23.5
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 21.7
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 21.5
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 21.3
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 21.2
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 21.1
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 20.3
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 19.9
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 19.8
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 19.3
Show all
Colon - Transverse
RPKM: 12.3
Samples: 196

Max RPKM: 17.7
Min RPKM: 3.7
Std RPKM: 1.9
Median RPKM: 12.2
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 17.7
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 17.0
GTEX-11GSP-1626-SM-5986N 60-69 years, female 16.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 16.2
GTEX-QEL4-1926-SM-4R1JI 50-59 years, male 16.1
GTEX-Q734-1126-SM-48TZY 40-49 years, female 16.0
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 15.8
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 15.8
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 15.8
GTEX-TKQ2-1326-SM-4DXT9 50-59 years, male 15.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

31.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 31.6
FF:10014-101C5 62,83,84 years, mixed 31.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.