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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.6TPM
GTEx:0.8RPKM
FANTOM5:2.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
 

Antibody staining

Antibody HPA027555

  

Endothelial cells

 Low  

Glandular cells

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

3.6
overview Male, age 54 Sample 1
TPM: 2.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 1.5
Min RPKM: 0.1
Std RPKM: 0.2
Median RPKM: 0.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 1.5
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 1.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 1.2
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 1.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 1.0
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 0.9
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 0.9
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 0.9
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 0.9
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 0.8
Show all
Colon - Transverse
RPKM: 1.1
Samples: 196

Max RPKM: 3.5
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 1.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 3.5
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 3.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 3.1
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 2.9
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 2.9
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 2.8
GTEX-1128S-1626-SM-5H12O 60-69 years, female 2.7
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 2.7
GTEX-144GN-1126-SM-5LU33 50-59 years, male 2.6
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 2.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2.9
FF:10014-101C5 62,83,84 years, mixed 2.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.