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APEX1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:89.8TPM
GTEx:35.2RPKM
FANTOM5:145.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA002564

  

Antibody CAB004294

  

Antibody CAB047307

  

Endothelial cells

 High   High   Medium  

Glandular cells

 High   High   Medium  

Peripheral nerve/ganglion

 High   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

89.8
overview Male, age 54 Sample 1
TPM: 76.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 113.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 116.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 61.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 91.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 102.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 123.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 88.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 74.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 100.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 84.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 77
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 55.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

35.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 31.6
Samples: 149

Max RPKM: 56.6
Min RPKM: 9.9
Std RPKM: 9.9
Median RPKM: 29.9
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 56.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 56.5
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 55.3
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 54.0
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 52.9
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 50.1
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 49.2
GTEX-12696-1926-SM-5EGJT 60-69 years, male 48.8
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 48.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 46.8
Show all
Colon - Transverse
RPKM: 37.8
Samples: 196

Max RPKM: 53.7
Min RPKM: 10.2
Std RPKM: 7.5
Median RPKM: 38.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 53.7
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 53.5
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 53.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 53.0
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 52.7
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 52.0
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 51.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 51.0
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 50.9
GTEX-Y114-1526-SM-4TT79 50-59 years, female 50.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

145.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 145.4
FF:10014-101C5 62,83,84 years, mixed 145.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.