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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:210.0TPM
GTEx:115.8RPKM
FANTOM5:133.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA049876

  

Antibody HPA053504

  

Antibody CAB025114

  

Endothelial cells

 Not detected   Not detected   Medium  

Glandular cells

 Low   Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

210.0
overview Male, age 54 Sample 1
TPM: 197.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 185.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 160.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 256.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 216.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 223.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 200.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 221.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 200.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 196.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 258.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 210
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 202.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

115.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 91.6
Samples: 149

Max RPKM: 130.8
Min RPKM: 54.6
Std RPKM: 14.5
Median RPKM: 91.1
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 130.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 129.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 125.1
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 119.9
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 119.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 119.1
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 118.0
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 116.8
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 116.7
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 113.4
Show all
Colon - Transverse
RPKM: 134.1
Samples: 196

Max RPKM: 330.5
Min RPKM: 49.0
Std RPKM: 48.2
Median RPKM: 125.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 330.5
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 306.1
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 285.4
GTEX-QLQW-0426-SM-447A7 30-39 years, male 253.1
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 252.4
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 249.1
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 245.3
GTEX-Q734-1126-SM-48TZY 40-49 years, female 242.8
GTEX-QMRM-1226-SM-447C6 50-59 years, male 219.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 213.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

133.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 133.6
FF:10014-101C5 62,83,84 years, mixed 133.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.