Fields »
ABOUT
HELP
BLOG
GDPD3

COLON - Expression summary

RNA expression
HPA:16.3TPM
GTEx:14.7RPKM
FANTOM5:1.6Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA041148

  

Antibody HPA041470

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Not detected   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

16.3
overview Male, age 54 Sample 1
TPM: 8.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 30.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 18.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 20.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 15.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 28.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.2
Samples: 149

Max RPKM: 30.3
Min RPKM: 1.5
Std RPKM: 5.8
Median RPKM: 6.4
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 30.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 24.4
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 22.8
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 21.6
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 20.9
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 20.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 20.4
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 20.2
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 20.0
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 19.8
Show all
Colon - Transverse
RPKM: 19.7
Samples: 196

Max RPKM: 82.7
Min RPKM: 1.6
Std RPKM: 12.3
Median RPKM: 18.2
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 82.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 57.9
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 57.1
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 47.5
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 46.0
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 44.2
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 44.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 43.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 42.2
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 41.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.6
FF:10014-101C5 62,83,84 years, mixed 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.