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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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USB1
  • TISSUE

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    CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

USB1

Gene description

U6 snRNA biogenesis 1

Protein class

Disease related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in a few tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Pending external verification.

Reliability score

Approved based on 1 antibody.
HPA041791
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

USB1 (HGNC Symbol)

Synonyms

C16orf57, FLJ13154, HVSL1, Mpn1

Description

U6 snRNA biogenesis 1 (HGNC Symbol)

Entrez gene summary

This gene encodes a protein with several conserved domains, however, its exact function is not known. Mutations in this gene are associated with poikiloderma with neutropenia (PN), which shows phenotypic overlap with Rothmund-Thomson syndrome (RTS) caused by mutations in the RECQL4 gene. It is believed that this gene product interacts with RECQL4 protein via SMAD4 proteins, explaining the partial clinical overlap between PN and RTS. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Mar 2011]

Chromosome

16

Cytoband

q21

Chromosome location (bp)

57999546 - 58021618

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000103005 (version 83.38)

Entrez gene

79650

UniProt

Q9BQ65 (UniProt - Evidence at protein level)

neXtProt

NX_Q9BQ65

Antibodypedia

USB1 antibodies

PROTEIN BROWSER

USB1-001
USB1-002
USB1-003
USB1-004
USB1-012
USB1-014

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

USB1-001
ENSP00000219281
ENST00000219281
Q9BQ65 [Direct mapping]
U6 snRNA phosphodiesterase
A0A024R6V6 [Target identity:100%; Query identity:100%]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0004518 [nuclease activity]
GO:0005634 [nucleus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
Show all
265 aa
30.3 kDa
No 0
USB1-002
ENSP00000446143
ENST00000539737
Q9BQ65 [Direct mapping]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0004518 [nuclease activity]
GO:0005634 [nucleus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
Show all
247 aa
28.1 kDa
No 0
USB1-003
ENSP00000454692
ENST00000563149
H3BN52 [Direct mapping]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004518 [nuclease activity]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
163 aa
18.5 kDa
No 0
USB1-004
ENSP00000409792
ENST00000423271
Q9BQ65 [Direct mapping]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000175 [3'-5'-exoribonuclease activity]
GO:0004518 [nuclease activity]
GO:0005634 [nucleus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090503 [RNA phosphodiester bond hydrolysis, exonucleolytic]
Show all
186 aa
20.8 kDa
No 0
USB1-012
ENSP00000454928
ENST00000561743
H3BNM8 [Direct mapping]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004518 [nuclease activity]
GO:0005634 [nucleus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
214 aa
24.8 kDa
No 0
USB1-014
ENSP00000457322
ENST00000561568
H3BTT8 [Direct mapping]
U6 snRNA phosphodiesterase
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004518 [nuclease activity]
GO:0034477 [U6 snRNA 3'-end processing]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
182 aa
20.7 kDa
No 0

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