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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.2TPM
GTEx:9.5RPKM
FANTOM5:27.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA041791

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

17.2
overview Male, age 54 Sample 1
TPM: 13.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.0
Samples: 149

Max RPKM: 16.0
Min RPKM: 6.3
Std RPKM: 2.1
Median RPKM: 9.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 16.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 15.6
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 15.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 15.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 14.8
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 14.5
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 14.4
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 14.3
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 14.2
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 14.2
Show all
Colon - Transverse
RPKM: 9.0
Samples: 196

Max RPKM: 20.0
Min RPKM: 5.6
Std RPKM: 1.9
Median RPKM: 8.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 20.0
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 18.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 14.6
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 14.5
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 14.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 13.5
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 13.0
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 12.9
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 12.5
GTEX-Y114-1526-SM-4TT79 50-59 years, female 12.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

27.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 27.8
FF:10014-101C5 62,83,84 years, mixed 27.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.