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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8.4TPM
GTEx:4.1RPKM
FANTOM5:5.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA041079

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

8.4
overview Male, age 54 Sample 1
TPM: 8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 10.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.8
Samples: 149

Max RPKM: 7.1
Min RPKM: 0.8
Std RPKM: 1.1
Median RPKM: 2.6
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 7.1
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 6.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 6.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 6.2
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 6.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 6.2
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 5.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 4.9
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 4.8
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 4.6
Show all
Colon - Transverse
RPKM: 5.0
Samples: 196

Max RPKM: 9.4
Min RPKM: 1.0
Std RPKM: 1.9
Median RPKM: 5.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 9.4
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 9.4
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 9.4
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 9.2
GTEX-139YR-2126-SM-5KM11 50-59 years, male 9.0
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 9.0
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 8.7
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 8.6
GTEX-144GN-1126-SM-5LU33 50-59 years, male 8.3
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 8.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

5.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 5.4
FF:10014-101C5 62,83,84 years, mixed 5.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.