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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:28.5TPM
GTEx:9.1RPKM
FANTOM5:31.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA039371

  

Antibody HPA040174

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

28.5
overview Male, age 54 Sample 1
TPM: 26.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 28.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 29.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 21.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 29.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 33.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 32.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 37.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.0
Samples: 149

Max RPKM: 13.7
Min RPKM: 3.5
Std RPKM: 1.8
Median RPKM: 6.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 13.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 12.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 12.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 12.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 11.9
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 11.4
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 11.0
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 10.6
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 10.1
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 10.0
Show all
Colon - Transverse
RPKM: 10.8
Samples: 196

Max RPKM: 20.9
Min RPKM: 4.0
Std RPKM: 3.3
Median RPKM: 10.6
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 20.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 20.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 20.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 18.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 17.6
GTEX-144GM-1226-SM-5LU52 20-29 years, male 16.8
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 16.7
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 16.6
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 16.5
GTEX-R55G-1226-SM-48FDC 40-49 years, female 16.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

31.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 31.7
FF:10014-101C5 62,83,84 years, mixed 31.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.