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TIMM44

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.2TPM
GTEx:21.8RPKM
FANTOM5:35.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA043052

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

9.2
overview Male, age 54 Sample 1
TPM: 7.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 17.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 24.8
Samples: 149

Max RPKM: 35.6
Min RPKM: 15.9
Std RPKM: 4.3
Median RPKM: 24.5
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 35.6
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 34.1
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 33.9
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 33.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 33.7
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 33.3
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 33.2
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 32.9
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 32.7
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 32.6
Show all
Colon - Transverse
RPKM: 19.6
Samples: 196

Max RPKM: 31.4
Min RPKM: 5.0
Std RPKM: 4.1
Median RPKM: 19.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 31.4
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 31.2
GTEX-QMRM-1226-SM-447C6 50-59 years, male 30.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 30.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 29.9
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 29.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 27.8
GTEX-11GSP-1626-SM-5986N 60-69 years, female 27.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 27.0
GTEX-QLQW-0426-SM-447A7 30-39 years, male 26.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

35.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 35.7
FF:10014-101C5 62,83,84 years, mixed 35.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.