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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:80.0TPM
GTEx:53.7RPKM
FANTOM5:171.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody CAB001514

  

Endothelial cells

 Medium  

Glandular cells

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

80.0
overview Male, age 54 Sample 1
TPM: 47.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 77.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 85.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 64
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 69.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 105.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 145.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 79
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 50.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 116.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 70.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 80.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 48.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

53.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 48.5
Samples: 149

Max RPKM: 89.2
Min RPKM: 30.2
Std RPKM: 10.6
Median RPKM: 46.4
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 89.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 82.1
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 80.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 76.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 75.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 73.8
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 72.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 71.8
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 71.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 70.6
Show all
Colon - Transverse
RPKM: 57.7
Samples: 196

Max RPKM: 103.2
Min RPKM: 25.2
Std RPKM: 13.4
Median RPKM: 55.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 103.2
GTEX-1128S-1626-SM-5H12O 60-69 years, female 103.1
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 98.5
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 94.6
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 93.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 92.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 91.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 90.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 85.7
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 85.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

171.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 171.0
FF:10014-101C5 62,83,84 years, mixed 171.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.