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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:71.5TPM
GTEx:41.5RPKM
FANTOM5:109.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA041605

  

Antibody HPA043576

  

Antibody CAB034345

  

Endothelial cells

 Low   Not detected   Low  

Glandular cells

 Medium   Medium   High  

Peripheral nerve/ganglion

 Medium   Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

71.5
overview Male, age 54 Sample 1
TPM: 138.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 72.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 78.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 84.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 64.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 45.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 54.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 56.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 83.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 70.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 83.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 61.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

41.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 36.8
Samples: 149

Max RPKM: 56.8
Min RPKM: 25.0
Std RPKM: 6.2
Median RPKM: 36.2
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 56.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 56.7
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 53.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 50.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 49.8
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 48.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 47.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 46.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 46.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 45.4
Show all
Colon - Transverse
RPKM: 45.0
Samples: 196

Max RPKM: 83.2
Min RPKM: 26.4
Std RPKM: 11.6
Median RPKM: 43.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 83.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 78.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 76.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 75.8
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 75.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 74.5
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 73.6
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 68.6
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 68.5
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 68.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

109.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 109.3
FF:10014-101C5 62,83,84 years, mixed 109.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.