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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:51.3TPM
GTEx:36.7RPKM
FANTOM5:69.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA019514

  

Antibody HPA020347

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

51.3
overview Male, age 54 Sample 1
TPM: 41
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 47.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 50.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 57.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 36.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 64.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 46
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 52.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 46.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 52.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 69.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 57.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 44.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 35.1
Samples: 149

Max RPKM: 66.5
Min RPKM: 14.6
Std RPKM: 9.6
Median RPKM: 35.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 66.5
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 58.3
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 57.4
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 53.8
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 51.9
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 51.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 51.6
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 49.8
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 49.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 49.3
Show all
Colon - Transverse
RPKM: 37.9
Samples: 196

Max RPKM: 66.8
Min RPKM: 13.0
Std RPKM: 8.1
Median RPKM: 38.9
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 66.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 60.2
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 56.5
GTEX-144GN-1126-SM-5LU33 50-59 years, male 52.3
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 52.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 51.2
GTEX-ZZ64-0726-SM-5GZX4 20-29 years, male 50.0
GTEX-S3XE-1126-SM-4AD4N 50-59 years, male 49.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 49.7
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 49.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

69.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 69.2
FF:10014-101C5 62,83,84 years, mixed 69.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.