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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.5TPM
GTEx:7.2RPKM
FANTOM5:49.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA029722

  

Antibody HPA029723

  

Antibody CAB005072

  

Endothelial cells

 Low   Low   Low  

Glandular cells

 Medium   Medium   High  

Peripheral nerve/ganglion

 Medium   Not detected   Medium  
     
     

COLON - HPA RNA-seq

Average TPM

13.5
overview Male, age 54 Sample 1
TPM: 14.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 13.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 15.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 12.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.9
Samples: 149

Max RPKM: 24.2
Min RPKM: 2.6
Std RPKM: 3.8
Median RPKM: 7.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 24.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 18.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 18.0
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 17.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 17.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 17.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 16.8
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 16.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 15.6
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 15.5
Show all
Colon - Transverse
RPKM: 6.7
Samples: 196

Max RPKM: 20.2
Min RPKM: 2.6
Std RPKM: 2.9
Median RPKM: 5.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 20.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 18.9
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 17.7
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 17.5
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 17.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 14.5
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 14.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 14.0
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 13.0
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 12.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

49.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 49.8
FF:10014-101C5 62,83,84 years, mixed 49.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.