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ACTA2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:840.5TPM
GTEx:727.3RPKM
FANTOM5:574.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA041264

  

Antibody HPA041271

  

Antibody CAB000002

  

Antibody CAB013531

  

Endothelial cells

 High   High   Not detected   Not detected  

Glandular cells

 Medium   Medium   Not detected   Not detected  

Peripheral nerve/ganglion

 High   Not detected   Not detected   Not detected  
       
       
       

COLON - HPA RNA-seq

Average TPM

840.5
overview Male, age 54 Sample 1
TPM: 549.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 312.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 109.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 514.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 298.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3641.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 579.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 287.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1608.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 319.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 684.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1129.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 892.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

727.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1053.4
Samples: 149

Max RPKM: 2305.3
Min RPKM: 165.3
Std RPKM: 421.0
Median RPKM: 1041.1
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 2305.3
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 2218.5
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 2214.7
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 2038.8
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 1983.5
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 1931.2
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 1904.9
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 1888.7
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 1846.6
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 1806.2
Show all
Colon - Transverse
RPKM: 479.4
Samples: 196

Max RPKM: 2155.7
Min RPKM: 31.9
Std RPKM: 456.6
Median RPKM: 324.0
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 2155.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 2111.6
GTEX-11GSP-1626-SM-5986N 60-69 years, female 2091.9
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 2023.8
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 1888.7
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 1354.7
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 1346.9
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 1326.1
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 1324.6
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 1321.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

574.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 574.5
FF:10014-101C5 62,83,84 years, mixed 574.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.