Fields »
ABOUT
HELP
BLOG
LHPP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:12.4TPM
GTEx:9.4RPKM
FANTOM5:55.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA009163

  

Antibody HPA009269

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Low   Medium  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

12.4
overview Male, age 54 Sample 1
TPM: 18.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 19.9
Min RPKM: 3.0
Std RPKM: 3.3
Median RPKM: 11.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 19.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 19.8
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 19.6
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 18.1
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 18.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 17.6
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 17.4
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 17.2
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 16.7
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 16.6
Show all
Colon - Transverse
RPKM: 8.0
Samples: 196

Max RPKM: 20.5
Min RPKM: 1.8
Std RPKM: 3.1
Median RPKM: 7.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 20.5
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 18.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 17.7
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 16.4
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 15.9
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 15.1
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 14.8
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 14.5
GTEX-S341-1426-SM-4AD6U 40-49 years, female 13.6
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 13.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

55.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 55.4
FF:10014-101C5 62,83,84 years, mixed 55.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.