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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:22.7TPM
GTEx:15.7RPKM
FANTOM5:80.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA036290

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

22.7
overview Male, age 54 Sample 1
TPM: 23.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 24.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 26
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 25.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 22.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 28.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 27.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.0
Samples: 149

Max RPKM: 27.5
Min RPKM: 12.5
Std RPKM: 2.4
Median RPKM: 17.5
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 27.5
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 26.2
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 23.5
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 23.3
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 23.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 22.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 22.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 22.2
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 22.2
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 21.7
Show all
Colon - Transverse
RPKM: 14.0
Samples: 196

Max RPKM: 27.2
Min RPKM: 9.0
Std RPKM: 3.1
Median RPKM: 13.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 27.2
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 22.8
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 22.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 21.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 21.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 20.4
GTEX-117YX-0826-SM-5H11J 50-59 years, male 20.3
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 19.9
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 19.9
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 19.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

80.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 80.1
FF:10014-101C5 62,83,84 years, mixed 80.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.