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CDK5RAP3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:46.0TPM
GTEx:54.3RPKM
FANTOM5:29.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 
 

Antibody staining

Antibody HPA022141

  

Antibody HPA022882

  

Antibody HPA027883

  

Endothelial cells

 Low   Medium   Medium  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 Low   Medium  
        
     
     

COLON - HPA RNA-seq

Average TPM

46.0
overview Male, age 54 Sample 1
TPM: 43.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 37.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 41.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 38.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 30.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 39
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 52.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 60.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 50.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 49.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 50.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 41.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 62.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

54.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 46.9
Samples: 149

Max RPKM: 95.9
Min RPKM: 20.9
Std RPKM: 16.1
Median RPKM: 43.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 95.9
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 88.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 84.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 84.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 83.3
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 82.5
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 82.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 78.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 77.6
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 75.9
Show all
Colon - Transverse
RPKM: 60.0
Samples: 196

Max RPKM: 112.7
Min RPKM: 18.5
Std RPKM: 17.6
Median RPKM: 59.1
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 112.7
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 103.7
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 95.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 95.0
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 94.0
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 92.6
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 91.9
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 89.2
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 88.0
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 86.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

29.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 29.9
FF:10014-101C5 62,83,84 years, mixed 29.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.