Tissue expression of CCDC47 - Summary - The Human Protein Atlas

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CCDC47

TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	CCDC47
Gene description	Coiled-coil domain containing 47
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	5
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in most tissues.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 1 antibody. HPA029674
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	CCDC47 (HGNC Symbol)
Synonyms	GK001
Description	Coiled-coil domain containing 47 (HGNC Symbol)
Entrez gene summary
Chromosome	17
Cytoband	q23.3
Chromosome location (bp)	63745250 - 63776351
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000108588 (version 83.38)
Entrez gene	57003
UniProt	Q96A33 (UniProt - Evidence at protein level)
neXtProt	NX_Q96A33
Antibodypedia	CCDC47 antibodies

PROTEIN BROWSER

CCDC47-001	CCDC47-002	CCDC47-003	CCDC47-005	CCDC47-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CCDC47-001 ENSP00000225726 ENST00000225726	Q96A33 [Direct mapping] Coiled-coil domain-containing protein 47 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0001649 [osteoblast differentiation] GO:0005509 [calcium ion binding] GO:0005515 [protein binding] GO:0005783 [endoplasmic reticulum] GO:0005791 [rough endoplasmic reticulum] GO:0006983 [ER overload response] GO:0007029 [endoplasmic reticulum organization] GO:0009791 [post-embryonic development] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0030433 [ER-associated ubiquitin-dependent protein catabolic process] GO:0044822 [poly(A) RNA binding] GO:0055074 [calcium ion homeostasis] Show all	483 aa 55.9 kDa	Yes	1
CCDC47-002 ENSP00000384888 ENST00000403162	Q96A33 [Direct mapping] Coiled-coil domain-containing protein 47 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0001649 [osteoblast differentiation] GO:0005509 [calcium ion binding] GO:0005515 [protein binding] GO:0005783 [endoplasmic reticulum] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0044822 [poly(A) RNA binding] Show all	483 aa 55.9 kDa	Yes	1
CCDC47-003 ENSP00000463577 ENST00000582252	Q96A33 [Direct mapping] Coiled-coil domain-containing protein 47 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0001649 [osteoblast differentiation] GO:0005509 [calcium ion binding] GO:0005515 [protein binding] GO:0005783 [endoplasmic reticulum] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0044822 [poly(A) RNA binding] Show all	480 aa 55.3 kDa	Yes	1
CCDC47-005 ENSP00000462202 ENST00000580986	J3KRX4 [Direct mapping] Coiled-coil domain-containing protein 47 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		19 aa 2.1 kDa	No	0
CCDC47-201 ENSP00000482148 ENST00000612558	A0A087WYW6 [Direct mapping] Coiled-coil domain-containing protein 47 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		190 aa 22.6 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.