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SMARCD2

COLON - Expression summary

RNA expression
HPA:44.0TPM
GTEx:31.2RPKM
FANTOM5:42.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

44.0
overview Male, age 54 Sample 1
TPM: 43.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 41.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 35.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 39.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 28.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 41.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 59.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 46
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 42.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 60.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 47.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 51.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 34.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

31.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 31.3
Samples: 149

Max RPKM: 58.8
Min RPKM: 10.2
Std RPKM: 8.5
Median RPKM: 30.8
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 58.8
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 50.9
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 50.1
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 49.3
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 47.4
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 46.7
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 46.7
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 46.2
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 44.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 44.5
Show all
Colon - Transverse
RPKM: 31.1
Samples: 196

Max RPKM: 53.2
Min RPKM: 12.8
Std RPKM: 6.5
Median RPKM: 30.7
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 53.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 49.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 46.9
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 46.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 45.9
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 44.9
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 44.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 43.4
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 42.8
GTEX-144GN-1126-SM-5LU33 50-59 years, male 42.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

42.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 42.6
FF:10014-101C5 62,83,84 years, mixed 42.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.