Fields »
ABOUT
HELP
BLOG
CYTH1

COLON - Expression summary

RNA expression
HPA:30.4TPM
GTEx:14.7RPKM
FANTOM5:54.4Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

30.4
overview Male, age 54 Sample 1
TPM: 40.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 34.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 35.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 33.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 33.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 42.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 30
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 26.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.2
Samples: 149

Max RPKM: 24.8
Min RPKM: 4.6
Std RPKM: 3.1
Median RPKM: 9.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 24.8
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 21.2
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 20.0
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 18.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 17.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 17.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 15.9
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 15.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 15.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 14.7
Show all
Colon - Transverse
RPKM: 18.1
Samples: 196

Max RPKM: 36.1
Min RPKM: 6.8
Std RPKM: 5.6
Median RPKM: 18.1
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 36.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 31.8
GTEX-RM2N-0926-SM-48FD1 50-59 years, male 31.4
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 30.9
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 30.9
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 30.0
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 28.5
GTEX-PWCY-1026-SM-48TD4 20-29 years, female 28.3
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 27.8
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 27.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

54.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 54.4
FF:10014-101C5 62,83,84 years, mixed 54.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.