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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:21.4TPM
GTEx:12.1RPKM
FANTOM5:30.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not available
Glandular cells:Low
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA038815

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

21.4
overview Male, age 54 Sample 1
TPM: 30.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 22.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 29.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.5
Samples: 149

Max RPKM: 20.7
Min RPKM: 2.9
Std RPKM: 3.3
Median RPKM: 10.0
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 20.7
GTEX-12696-1926-SM-5EGJT 60-69 years, male 19.6
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 19.4
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 19.3
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 19.0
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 18.9
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 18.4
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 18.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 17.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 17.1
Show all
Colon - Transverse
RPKM: 13.4
Samples: 196

Max RPKM: 30.9
Min RPKM: 3.6
Std RPKM: 4.0
Median RPKM: 13.2
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 30.9
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 26.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 24.3
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 23.7
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 23.1
GTEX-117YX-0826-SM-5H11J 50-59 years, male 22.0
GTEX-QLQW-0426-SM-447A7 30-39 years, male 22.0
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 20.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 20.4
GTEX-ZP4G-1726-SM-4WWCM 20-29 years, female 20.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

30.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 30.3
FF:10014-101C5 62,83,84 years, mixed 30.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.