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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.8TPM
GTEx:3.3RPKM
FANTOM5:4.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA037502

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

3.8
overview Male, age 54 Sample 1
TPM: 3.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.2
Samples: 149

Max RPKM: 8.8
Min RPKM: 1.3
Std RPKM: 1.6
Median RPKM: 3.7
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 8.8
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 8.6
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 7.9
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 7.8
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 7.6
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 7.4
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 7.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 7.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 6.9
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 6.8
Show all
Colon - Transverse
RPKM: 2.6
Samples: 196

Max RPKM: 6.3
Min RPKM: 0.3
Std RPKM: 1.1
Median RPKM: 2.3
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 6.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 6.2
GTEX-11GSP-1626-SM-5986N 60-69 years, female 6.1
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 5.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 5.9
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 5.6
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 5.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 5.4
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 5.2
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 5.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

4.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 4.7
FF:10014-101C5 62,83,84 years, mixed 4.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.