Tissue expression of CARS - Staining in adipose tissue - The Human Protein Atlas

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CARS

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	20.8	TPM
GTEx:	10.1	RPKM
FANTOM5:	25.2	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Low
Fibroblasts:	Low
Chondrocytes:	Low
Peripheral nerve:	Low

Antibody staining	Antibody HPA002383		Antibody HPA002384		Antibody CAB075734		Antibody CAB075735		Antibody CAB075736		Antibody CAB075737
Adipocytes	Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Low		Not detected		Low
Chondrocytes	Not detected		Low		High
Peripheral nerve	Not detected		Medium		Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Low
Fibroblasts:	Low
Peripheral nerve:	Low

Antibody staining	Antibody HPA002383		Antibody HPA002384		Antibody CAB075734		Antibody CAB075735		Antibody CAB075736		Antibody CAB075737
Adipocytes	Not detected		Not detected		Not detected		Medium		Medium		Medium
Fibroblasts	Not detected		Not detected		Low		Medium		Medium		Medium
Peripheral nerve	Not detected		Not detected		Not detected		Low		Medium		High

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	20.8

N/A

Female, age 80

Sample 1
TPM: 9.9

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 18.8

N/A

Female, age 57

Sample 3
TPM: 12.9

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 34.2

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 28.4

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	10.1

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 10.0

Samples: 350

Max RPKM: 27.6
Min RPKM: 5.0
Std RPKM: 3.0
Median RPKM: 9.4

GTEX-U8XE-0426-SM-3DB91

30-39 years, male

27.6

GTEX-OOBK-0226-SM-2YUMF

40-49 years, male

23.0

GTEX-QESD-1526-SM-2S1QT

20-29 years, male

22.2

GTEX-13O1R-0226-SM-5K7U5

60-69 years, male

22.1

GTEX-ZYVF-0226-SM-5GIEG

50-59 years, female

22.1

GTEX-11TUW-2626-SM-5EQKZ

60-69 years, male

21.3

GTEX-T5JW-1726-SM-3GADN

20-29 years, female

20.4

GTEX-XXEK-2426-SM-4BRUS

50-59 years, male

19.4

GTEX-QLQW-1226-SM-2S1Q9

30-39 years, male

19.3

GTEX-QDVJ-1826-SM-2S1P3

50-59 years, male

19.2

Show all

Adipose - Visceral (Omentum)
RPKM: 10.2

Samples: 227

Max RPKM: 29.3
Min RPKM: 4.9
Std RPKM: 4.5
Median RPKM: 8.8

GTEX-13IVO-2426-SM-5K7V9

70-79 years, male

29.3

GTEX-11I78-0226-SM-5HL6R

50-59 years, female

29.1

GTEX-Y5LM-0826-SM-4VDSW

40-49 years, female

27.2

GTEX-ZT9W-1026-SM-57WG5

50-59 years, male

26.2

GTEX-11XUK-1726-SM-5GU61

40-49 years, female

25.2

GTEX-1339X-0726-SM-5L3FF

40-49 years, male

24.8

GTEX-1399S-1426-SM-5PNYQ

30-39 years, female

23.4

GTEX-13PDP-1226-SM-5K7TW

60-69 years, male

22.5

GTEX-U8XE-1926-SM-3DB98

30-39 years, male

22.2

GTEX-1122O-0926-SM-5N9C9

60-69 years, female

21.3

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	25.2

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 25.2

65,65,76 years, mixed

25.2

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.