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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.0TPM
GTEx:8.8RPKM
FANTOM5:23.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA038664

  

Antibody HPA038665

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

17.0
overview Male, age 54 Sample 1
TPM: 13.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 22.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 24.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.2
Samples: 149

Max RPKM: 14.3
Min RPKM: 2.1
Std RPKM: 2.0
Median RPKM: 8.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 14.3
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 13.1
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 13.0
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 12.4
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 12.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 11.8
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 11.8
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 11.5
GTEX-13111-1926-SM-5GCOL 50-59 years, male 11.5
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 11.5
Show all
Colon - Transverse
RPKM: 9.3
Samples: 196

Max RPKM: 13.3
Min RPKM: 1.1
Std RPKM: 2.0
Median RPKM: 9.6
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 13.3
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 13.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 13.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 12.7
GTEX-PX3G-1426-SM-48U1J 20-29 years, female 12.5
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 12.5
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 12.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 12.3
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 12.2
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 12.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

23.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 23.8
FF:10014-101C5 62,83,84 years, mixed 23.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.