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PTPN6

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:21.3TPM
GTEx:9.3RPKM
FANTOM5:22.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
 

Antibody staining

Antibody HPA001466

  

Antibody CAB004572

  

Antibody CAB072845

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Medium   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

21.3
overview Male, age 54 Sample 1
TPM: 19.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 20
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 21.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 21.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 25.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 27.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 32.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.2
Samples: 149

Max RPKM: 10.7
Min RPKM: 0.7
Std RPKM: 1.6
Median RPKM: 2.7
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 10.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 10.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 7.7
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 7.2
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 6.9
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 6.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 6.7
GTEX-V955-1726-SM-4JBHF 60-69 years, male 6.5
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 6.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 6.2
Show all
Colon - Transverse
RPKM: 13.9
Samples: 196

Max RPKM: 36.2
Min RPKM: 0.8
Std RPKM: 7.6
Median RPKM: 15.1
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 36.2
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 32.4
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 31.7
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 31.5
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 31.2
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 30.2
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 26.4
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 25.4
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 25.3
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 24.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

22.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 22.5
FF:10014-101C5 62,83,84 years, mixed 22.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.