Fields »
ABOUT
HELP
BLOG
BAG2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.6TPM
GTEx:11.2RPKM
FANTOM5:62.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA018862

  

Antibody HPA019918

  

Endothelial cells

 High   Not detected  

Glandular cells

 Medium   Not detected  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

6.6
overview Male, age 54 Sample 1
TPM: 3.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 29.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 15.8
Samples: 149

Max RPKM: 39.4
Min RPKM: 3.1
Std RPKM: 6.5
Median RPKM: 15.1
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 39.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 35.9
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 33.8
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 30.9
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 30.8
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 27.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 26.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 26.7
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 26.3
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 26.0
Show all
Colon - Transverse
RPKM: 7.7
Samples: 196

Max RPKM: 45.0
Min RPKM: 0.0
Std RPKM: 8.1
Median RPKM: 4.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 45.0
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 35.2
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 28.1
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 25.2
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 25.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 24.9
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 24.0
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 23.4
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 23.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 23.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

62.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 62.2
FF:10014-101C5 62,83,84 years, mixed 62.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.