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Field

Term
Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

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Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

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Score

Score

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Antibodies

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SENP6
  • TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SENP6

Gene description

SUMO1/sentrin specific peptidase 6

Protein class

Enzymes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

5
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General nuclear or nucleolar expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA024376
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Skin

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

SENP6 (HGNC Symbol)

Synonyms

KIAA0797, SUSP1

Description

SUMO1/sentrin specific peptidase 6 (HGNC Symbol)

Entrez gene summary

Ubiquitin-like molecules (UBLs), such as SUMO1 (UBL1; MIM 601912), are structurally related to ubiquitin (MIM 191339) and can be ligated to target proteins in a similar manner as ubiquitin. However, covalent attachment of UBLs does not result in degradation of the modified proteins. SUMO1 modification is implicated in the targeting of RANGAP1 (MIM 602362) to the nuclear pore complex, as well as in stabilization of I-kappa-B-alpha (NFKBIA; MIM 164008) from degradation by the 26S proteasome. Like ubiquitin, UBLs are synthesized as precursor proteins, with 1 or more amino acids following the C-terminal glycine-glycine residues of the mature UBL protein. Thus, the tail sequences of the UBL precursors need to be removed by UBL-specific proteases, such as SENP6, prior to their conjugation to target proteins (Kim et al., 2000 [PubMed 10799485]). SENPs also display isopeptidase activity for deconjugation of SUMO-conjugated substrates (Lima and Reverter, 2008 [PubMed 18799455]).[supplied by OMIM, Jun 2009]

Chromosome

6

Cytoband

q14.1

Chromosome location (bp)

75601509 - 75718278

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000112701 (version 83.38)

Entrez gene

26054

UniProt

Q9GZR1 (UniProt - Evidence at protein level)

neXtProt

NX_Q9GZR1

Antibodypedia

SENP6 antibodies

PROTEIN BROWSER

SENP6-002
SENP6-003
SENP6-004
SENP6-007
SENP6-010

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SENP6-002
ENSP00000359027
ENST00000370010
Q9GZR1 [Direct mapping]
Sentrin-specific protease 6
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016925 [protein sumoylation]
GO:0016926 [protein desumoylation]
GO:0016929 [SUMO-specific protease activity]
GO:0070646 [protein modification by small protein removal]
GO:0090169 [regulation of spindle assembly]
GO:0090234 [regulation of kinetochore assembly]
Show all
1105 aa
125.3 kDa
No 0
SENP6-003
ENSP00000426480
ENST00000483859
D6RG09 [Direct mapping]
Sentrin-specific protease 6
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
220 aa
24.8 kDa
No 0
SENP6-004
ENSP00000402527
ENST00000447266
Q9GZR1 [Direct mapping]
Sentrin-specific protease 6
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016925 [protein sumoylation]
GO:0016926 [protein desumoylation]
GO:0016929 [SUMO-specific protease activity]
GO:0070646 [protein modification by small protein removal]
GO:0090169 [regulation of spindle assembly]
GO:0090234 [regulation of kinetochore assembly]
Show all
1112 aa
126.1 kDa
No 0
SENP6-007
ENSP00000391426
ENST00000424947
H0Y4F4 [Direct mapping]
Sentrin-specific protease 6
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
Show all
582 aa
65.7 kDa
No 0
SENP6-010
ENSP00000321820
ENST00000327284
F8W6D9 [Direct mapping]
Sentrin-specific protease 6
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
Show all
685 aa
76.9 kDa
No 0

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