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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:34.8TPM
GTEx:9.6RPKM
FANTOM5:43.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Glandular cells:Medium
Endothelial cells:Not available
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA004829

  

Antibody CAB004975

  

Glandular cells

 Medium   Medium  

Endothelial cells

 Medium  

Peripheral nerve/ganglion

 High  
   
   
   

COLON - HPA RNA-seq

Average TPM

34.8
overview Male, age 54 Sample 1
TPM: 34
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 35.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 51.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 28.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 33
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 38.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 38.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 35.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 44.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 33.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.1
Samples: 149

Max RPKM: 17.0
Min RPKM: 3.3
Std RPKM: 2.0
Median RPKM: 9.1
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 17.0
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 15.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 14.2
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 13.8
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 13.1
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 13.0
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 12.6
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 12.2
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 12.2
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 12.1
Show all
Colon - Transverse
RPKM: 10.1
Samples: 196

Max RPKM: 17.6
Min RPKM: 1.5
Std RPKM: 2.4
Median RPKM: 10.1
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 17.6
GTEX-R55G-1226-SM-48FDC 40-49 years, female 16.9
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 16.4
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 15.5
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 15.1
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 14.7
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 14.6
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 14.4
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 14.3
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 14.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

43.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 43.1
FF:10014-101C5 62,83,84 years, mixed 43.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.