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PDGFRB

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.4TPM
GTEx:25.4RPKM
FANTOM5:86.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA028499

  

Antibody CAB003842

  

Antibody CAB018144

  

Endothelial cells

 Medium   Low   Not detected  

Glandular cells

 High   Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

17.4
overview Male, age 54 Sample 1
TPM: 14.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 15
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 21.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 26.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.1
Samples: 149

Max RPKM: 127.2
Min RPKM: 10.0
Std RPKM: 14.6
Median RPKM: 26.6
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 127.2
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 75.5
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 74.9
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 72.9
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 65.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 62.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 60.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 56.7
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 53.5
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 52.5
Show all
Colon - Transverse
RPKM: 21.9
Samples: 196

Max RPKM: 108.2
Min RPKM: 3.7
Std RPKM: 16.2
Median RPKM: 15.7
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 108.2
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 80.0
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 74.5
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 72.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 64.0
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 61.6
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 59.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 58.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 57.1
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 56.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

86.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 86.6
FF:10014-101C5 62,83,84 years, mixed 86.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.