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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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NPHP3
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

NPHP3

Gene description

Nephronophthisis 3 (adolescent)

Protein class

Disease related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Mixed
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in several tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Pending external verification.

Reliability score

Uncertain based on 1 antibody.
HPA009150
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

NPHP3 (HGNC Symbol)

Synonyms

CFAP31, FLJ30691, FLJ36696, KIAA2000, MKS7, NPH3, SLSN3

Description

Nephronophthisis 3 (adolescent) (HGNC Symbol)

Entrez gene summary

This gene encodes a protein containing a coiled-coil (CC) domain, a tubulin-tyrosine ligase (TTL) domain, and a tetratrico peptide repeat (TPR) domain. The encoded protein interacts with nephrocystin, it is required for normal ciliary development, and it functions in renal tubular development. Mutations in this gene are associated with nephronophthisis type 3, and also with renal-hepatic-pancreatic dysplasia, and Meckel syndrome type 7. Naturally occurring read-through transcripts exist between this gene and the downstream ACAD11 (acyl-CoA dehydrogenase family, member 11) gene. [provided by RefSeq, Feb 2011]

Chromosome

3

Cytoband

q22.1

Chromosome location (bp)

132680609 - 132722442

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000113971 (version 83.38)

Entrez gene

27031

UniProt

Q7Z494 (UniProt - Evidence at protein level)

neXtProt

NX_Q7Z494

Antibodypedia

NPHP3 antibodies

PROTEIN BROWSER

NPHP3-006
NPHP3-011

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

NPHP3-006
ENSP00000338766
ENST00000337331
Q7Z494 [Direct mapping]
Nephrocystin-3
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001822 [kidney development]
GO:0001947 [heart looping]
GO:0003283 [atrial septum development]
GO:0005515 [protein binding]
GO:0005829 [cytosol]
GO:0005929 [cilium]
GO:0006996 [organelle organization]
GO:0007368 [determination of left/right symmetry]
GO:0016055 [Wnt signaling pathway]
GO:0030324 [lung development]
GO:0035469 [determination of pancreatic left/right asymmetry]
GO:0045494 [photoreceptor cell maintenance]
GO:0048496 [maintenance of organ identity]
GO:0060027 [convergent extension involved in gastrulation]
GO:0060271 [cilium morphogenesis]
GO:0060287 [epithelial cilium movement involved in determination of left/right asymmetry]
GO:0060993 [kidney morphogenesis]
GO:0071908 [determination of intestine left/right asymmetry]
GO:0071909 [determination of stomach left/right asymmetry]
GO:0071910 [determination of liver left/right asymmetry]
GO:0072189 [ureter development]
GO:0072372 [primary cilium]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
GO:2000095 [regulation of Wnt signaling pathway, planar cell polarity pathway]
GO:2000167 [regulation of planar cell polarity pathway involved in neural tube closure]
Show all
1330 aa
150.9 kDa
No 0
NPHP3-011
ENSP00000427666
ENST00000512094
H0YAM4 [Direct mapping]
Nephrocystin-3
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
87 aa
10 kDa
No 0

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