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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:10.5TPM
GTEx:4.9RPKM
FANTOM5:81.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA018327

  

Antibody HPA019880

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Not detected  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

10.5
overview Male, age 54 Sample 1
TPM: 13.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 14
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.7
Samples: 149

Max RPKM: 17.6
Min RPKM: 2.0
Std RPKM: 2.2
Median RPKM: 4.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 17.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 15.7
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 13.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 12.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 10.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 10.2
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 8.1
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 8.1
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 8.0
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 8.0
Show all
Colon - Transverse
RPKM: 5.1
Samples: 196

Max RPKM: 20.1
Min RPKM: 2.2
Std RPKM: 2.1
Median RPKM: 4.9
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 20.1
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 19.2
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 11.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 11.3
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 10.8
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 10.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 10.2
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 10.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 8.5
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 7.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

81.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 81.7
FF:10014-101C5 62,83,84 years, mixed 81.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.