Tissue expression of SSR3 - Staining in adipose tissue

SOFT TISSUE - Expression summary

Protein expression

RNA expression

HPA:	92.0	TPM
GTEx:	24.5	RPKM
FANTOM5:	218.8	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	High
Chondrocytes:	High
Fibroblasts:	Low
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA014906
Adipocytes	High
Chondrocytes	High
Fibroblasts	Low
Peripheral nerve	Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	High
Fibroblasts:	Medium
Peripheral nerve:	Low

Antibody staining	Antibody HPA014906
Adipocytes	High
Fibroblasts	Medium
Peripheral nerve	Low

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	92.0

Female, age 80

Sample 1
TPM: 58.4

Cell types%

Adipocytes: 95
Other cell types: 5

Female, age 45

Sample 2
TPM: 99.3

Female, age 57

Sample 3
TPM: 77

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

Female, age 74

Sample 4
TPM: 130.8

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

Female, age 59

Sample 5
TPM: 94.6

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	24.5

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 23.0

Samples: 350

Max RPKM: 51.6
Min RPKM: 14.1
Std RPKM: 5.0
Median RPKM: 22.1

GTEX-XYKS-2726-SM-4E3IC

60-69 years, female

51.6

GTEX-XQ3S-1626-SM-4WAYN

20-29 years, male

42.9

GTEX-WEY5-1926-SM-3GIL8

40-49 years, female

42.1

GTEX-OIZI-0226-SM-2XCEE

40-49 years, male

40.0

GTEX-POYW-0726-SM-2XCEO

60-69 years, male

36.9

GTEX-O5YT-0226-SM-32PK5

20-29 years, male

36.1

GTEX-Q2AH-1726-SM-3NB2B

40-49 years, male

35.8

GTEX-WY7C-2426-SM-3NB2V

50-59 years, male

35.5

GTEX-ZDXO-2426-SM-5S2NJ

60-69 years, male

35.2

GTEX-YB5K-2226-SM-4WWG1

40-49 years, female

34.5

Show all

Adipose - Visceral (Omentum)
RPKM: 26.9

Samples: 227

Max RPKM: 53.3
Min RPKM: 13.6
Std RPKM: 6.1
Median RPKM: 25.5

GTEX-1128S-0926-SM-5GZZU

60-69 years, female

53.3

GTEX-1339X-0726-SM-5L3FF

40-49 years, male

49.0

GTEX-XYKS-1826-SM-4E3JV

60-69 years, female

48.5

GTEX-Y5LM-0826-SM-4VDSW

40-49 years, female

45.5

GTEX-ZYVF-1026-SM-5E44V

50-59 years, female

43.5

GTEX-ZAJG-1626-SM-5HL7I

50-59 years, female

41.4

GTEX-ZZPU-0326-SM-5N9BJ

50-59 years, female

40.2

GTEX-1399S-1426-SM-5PNYQ

30-39 years, female

40.0

GTEX-11WQK-1526-SM-5EGKN

50-59 years, male

39.4

GTEX-145MI-0826-SM-5SI95

60-69 years, female

38.9

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	218.8

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 218.8

FF:10010-101C1

65,65,76 years, mixed

218.8