Fields »
ABOUT
HELP
BLOG
RTN4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:188.6TPM
GTEx:41.6RPKM
FANTOM5:281.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA023977

  

Antibody CAB005388

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

188.6
overview Male, age 54 Sample 1
TPM: 204.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 170
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 180.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 216.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 171.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 233
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 175.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 177.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 179.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 174.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 198.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 205.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 165.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

41.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 46.6
Samples: 149

Max RPKM: 82.2
Min RPKM: 24.5
Std RPKM: 11.4
Median RPKM: 44.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 82.2
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 79.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 79.8
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 73.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 73.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 72.6
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 70.9
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 70.1
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 68.6
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 66.6
Show all
Colon - Transverse
RPKM: 37.7
Samples: 196

Max RPKM: 94.3
Min RPKM: 21.5
Std RPKM: 11.8
Median RPKM: 35.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 94.3
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 83.9
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 80.8
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 73.9
GTEX-117YX-0826-SM-5H11J 50-59 years, male 72.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 70.6
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 68.3
GTEX-ZY6K-1226-SM-5GZYL 50-59 years, male 61.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 60.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 60.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

281.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 281.4
FF:10014-101C5 62,83,84 years, mixed 281.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.