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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:165.5TPM
GTEx:191.3RPKM
FANTOM5:228.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA027066

  

Antibody CAB000126

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   Not detected  

Peripheral nerve/ganglion

 Medium  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

165.5
overview Male, age 54 Sample 1
TPM: 202.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 109.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 87.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 211
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 589.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 91.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 127.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 253.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 34.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 157.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 144.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 113.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

191.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 282.9
Samples: 149

Max RPKM: 839.9
Min RPKM: 64.0
Std RPKM: 146.4
Median RPKM: 243.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 839.9
GTEX-XBED-1726-SM-47JYO 60-69 years, male 778.9
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 723.5
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 679.0
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 674.0
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 666.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 624.9
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 559.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 547.5
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 542.0
Show all
Colon - Transverse
RPKM: 121.6
Samples: 196

Max RPKM: 880.0
Min RPKM: 5.3
Std RPKM: 135.9
Median RPKM: 70.1
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 880.0
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 678.5
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 588.6
GTEX-117YX-0826-SM-5H11J 50-59 years, male 553.4
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 488.8
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 459.9
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 451.8
GTEX-QDVJ-1326-SM-48U1X 50-59 years, male 446.8
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 439.4
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 425.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

228.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 228.3
FF:10014-101C5 62,83,84 years, mixed 228.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.